Acriflavine Resistance Protein A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Acriflavine Resistance Protein A
  Conformer 1
(PDB)
2f1m (B)
  Conformer 2
(PDB)
2f1m (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 155 1.51   55 - 104   106 - 106   167 - 295
2 61 1.58   105 - 105   107 - 166

Sequence


           _________________________________________________104___________________________________________________________166______ 
 2f1m(B) : TTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLA 
         :                                                                                                                          
 2f1m(C) : TTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLA 
           _________________________________________________104___________________________________________________________166______ 

           ________________________________________________________________________________________________________________________ 
 2f1m(B) : YTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDPIYVDVTQS--------------------aKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTpGfVRARL 
         :                                                                                                                          
 2f1m(C) : YTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDPIYVDVTQSSNDrLKQELANGTLKQENGKAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTpGfVRARL 
           ________________________________________________________________________________________________________________________ 

           __                                                                                                                       
 2f1m(B) : **                                                                                                                       
         :                                                                                                                          
 2f1m(C) : EE                                                                                                                       
           __                                                                                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
22.0
Translation
(A)
-1.2
Closure
(%)
99.3
Bending Residues
( green )
  104 - 107
  166 - 167
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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