Adenovirus Fibre

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenovirus Fibre
  Conformer 1
(PDB)
1qiu (B)
  Conformer 2
(PDB)
1qiu (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 194 0.25   379 - 384   393 - 580
2 66 0.4   321 - 378   385 - 392

Sequence


           _________________________________________________________378___384_____392______________________________________________ 
 1qiu(B) : VSIKKSSGLNFDNTAIAINAGKGLEFDTNTSESPDINPIKTKIGSGIDYNENGAMITKLGAGLSFDNSGAITIGNKNDDKLTLWTTPDPSPNCRIHSDNDCKFTLVLTKCGSQVLATVAA 
         :                                                                                                                          
 1qiu(E) : VSIKKSSGLNFDNTAIAINAGKGLEFDTNTSESPDINPIKTKIGSGIDYNENGAMITKLGAGLSFDNSGAITIGNKNDDKLTLWTTPDPSPNCRIHSDNDCKFTLVLTKCGSQVLATVAA 
           _________________________________________________________378___384_____392______________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1qiu(B) : LAVSGDLSSMTGTVASVSIFLRFDQNGVLMENSSLKKHYWNFRNGNSTNANPYTNAVGFMPNLLAYPKTQSQTAKNNIVSQVYLHGDKTKPMILTITLNGTSESTETSEVSTYSMSFTWS 
         :                                                                                                                          
 1qiu(E) : LAVSGDLSSMTGTVASVSIFLRFDQNGVLMENSSLKKHYWNFRNGNSTNANPYTNAVGFMPNLLAYPKTQSQTAKNNIVSQVYLHGDKTKPMILTITLNGTSESTETSEVSTYSMSFTWS 
           ________________________________________________________________________________________________________________________ 

           ________________________                                                                                                 
 1qiu(B) : WESGKYTTETFATNSYTFSYIAQE                                                                                                 
         :                                                                                                                          
 1qiu(E) : WESGKYTTETFATNSYTFSYIAQE                                                                                                 
           ________________________                                                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.1
Translation
(A)
0.2
Closure
(%)
99.3
Bending Residues
( green )
  378 - 380
  384 - 385
  392 - 393
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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