Adenylate Cyclase, Type V

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenylate Cyclase, Type V
  Conformer 1
(PDB)
1cjk (A)
  Conformer 2
(PDB)
2gvd (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 152 0.58   379 - 395   417 - 470   483 - 563
2 23 1.03   396 - 416   481 - 482

Sequence


           _________________395__________________416________________________________________________467____________________________ 
 1cjk(A) : *MMFHKIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHAHCCVEMGMDMIEAISLVREMTGVNVNMRVGIHSGRVHCG 
         :                                                                                                                          
 2gvd(A) : DMMFHKIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHAHCCVEMGMDMIEAISLVREMTGVNVNMRVGIHSGRVHCG 
           _________________395__________________416________________________________________________467____________________________ 

           ______________________________________________________________________                                                   
 1cjk(A) : VLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHITKATLSYLNGDYEVEPGCGGERNAYLKEHSIETFLIL                                                   
         :                                                                                                                          
 2gvd(A) : VLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHITKATLSYLNGDYEVEPGCGGERNAYLKEHSIETFLIL                                                   
           ______________________________________________________________________                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
15.0
Translation
(A)
-0.4
Closure
(%)
33.4
Bending Residues
( green )
  395 - 396
  416 - 419
  467 - 485
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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