Alcohol Dehydrogenase Class III Chi Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Alcohol Dehydrogenase Class III Chi Chain
  Conformer 1
(PDB)
1mc5 (A)
  Conformer 2
(PDB)
1teh (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 256 0.6   5 - 8   24 - 24   28 - 35   46 - 46   61 - 62   66 - 66   72 - 88   90 - 91   101 - 110   122 - 123   125 - 125   137 - 139   145 - 152   156 - 163   168 - 345   349 - 350   362 - 369
2 113 0.56   3 - 4   9 - 23   25 - 27   36 - 45   47 - 60   63 - 65   67 - 71   89 - 89   92 - 100   111 - 121   124 - 124   126 - 136   140 - 144   153 - 155   164 - 167   346 - 348   351 - 361   370 - 371

Sequence


           __3____8_____________23__27______35________45_____________60___65____71_______________88_________100_______110________12 
 1mc5(A) : ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 
         :                                                                                                                          
 1teh(A) : ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 
           __5___10_____________25__29______37________47_____________61___66____72_______________89_________101_______111________12 

           1____________136_____144_____152________163_167_________________________________________________________________________ 
 1mc5(A) : LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI 
         :                                                                                                                          
 1teh(A) : LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI 
           2____________137_____145_____153________164_168_________________________________________________________________________ 

           ______________________________________________________________________________________________________345_____________36 
 1mc5(A) : NPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFEL 
         :                                                                                                                          
 1teh(A) : NPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFEL 
           ______________________________________________________________________________________________________346_____________36 

           1____368_____                                                                                                            
 1mc5(A) : MHSGKSIRTVVKI                                                                                                            
         :                                                                                                                          
 1teh(A) : MHSGKSIRTVVKI                                                                                                            
           2____369_____                                                                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.9
Translation
(A)
-0.1
Closure
(%)
97.8
Bending Residues
( green )
  3 - 5
  8 - 9
  23 - 25
  27 - 28
  35 - 36
  45 - 47
  60 - 63
  65 - 67
  71 - 72
  88 - 92
  100 - 101
  110 - 111
  121 - 126
  136 - 137
  139 - 140
  144 - 145
  152 - 153
  155 - 156
  163 - 164
  167 - 168
  345 - 346
  348 - 351
  361 - 366
  368 - 370
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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