Algq1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Algq1
  Conformer 1
(PDB)
1y3q (A)
  Conformer 2
(PDB)
1y3n (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 263 0.54   135 - 309   401 - 488
2 223 0.46   3 - 134   310 - 400

Sequence


           ________________________________________________________________________________________________________________________ 
 1y3q(A) : REATWVTEKPLTLKIHMHFRDKWVWDENWPVAREVARLTNVKLVGVANRAATNSQEQFNLMMASGQLPDIVGGDNLKDKFIRYGMEGAFIPLNKLIDQNAPNLKAFFKTHPEVQRAITAP 
         :                                                                                                                          
 1y3n(A) : REATWVTEKPLTLKIHMHFRDKWVWDENWPVAREVARLTNVKLVGVANRAATNSQEQFNLMMASGQLPDIVGGDNLKDKFIRYGMEGAFIPLNKLIDQNAPNLKAFFKTHPEVQRAITAP 
           ________________________________________________________________________________________________________________________ 

           _________132____________________________________________________________________________________________________________ 
 1y3q(A) : DGNIYYLPYVPDGLVSRGYFIRQDWLDKLHLKTPQTVDELYTVLKAFKEKDPNGNGKADEIPFINRDPEEVFRLVNFWGARSTGSNTWMDFYVENGKIKHPFAEVAFKDGIKHVAQWYKE 
         :                                                                                                                          
 1y3n(A) : DGNIYYLPYVPDGLVSRGYFIRQDWLDKLHLKTPQTVDELYTVLKAFKEKDPNGNGKADEIPFINRDPEEVFRLVNFWGARSTGSNTWMDFYVENGKIKHPFAEVAFKDGIKHVAQWYKE 
           _________132____________________________________________________________________________________________________________ 

           __________________________________________________________________309___________________________________________________ 
 1y3q(A) : GLIDPEIFTRKARSREQTFGNNIGGMTHDWFASTALFNDALSKNIPGFKLVPMAPPINSKGQRWEEDARQIPRPDGWAITATNKNPVETIKLFDFYFGPKGRELSNFGVPGLTYDIKNGK 
         :                                                                                                                          
 1y3n(A) : GLIDPEIFTRKARSREQTFGNNIGGMTHDWFASTALFNDALSKNIPGFKLVPMAPPINSKGQRWEEDARQIPRPDGWAITATNKNPVETIKLFDFYFGPKGRELSNFGVPGLTYDIKNGK 
           __________________________________________________________________309___________________________________________________ 

           ____________________________________399_________________________________________________________________________________ 
 1y3q(A) : PVYKDTVLKAAQPVNNQMYDIGAQIPIGFWQDYEYERQWTNDVALQGIDMYIKNKYVLPQFTGVNLTVEEREIYDKYWPDVKTYMFEMGQSWVMGTKDPEKTWNDYQQQLKNRGFYQVMI 
         :                                                                                                                          
 1y3n(A) : PVYKDTVLKAAQPVNNQMYDIGAQIPIGFWQDYEYERQWTNDVALQGIDMYIKNKYVLPQFTGVNLTVEEREIYDKYWPDVKTYMFEMGQSWVMGTKDPEKTWNDYQQQLKNRGFYQVMI 
           ____________________________________399_________________________________________________________________________________ 

           __________                                                                                                               
 1y3q(A) : VMQKAYDRQY                                                                                                               
         :                                                                                                                          
 1y3n(A) : VMQKAYDRQY                                                                                                               
           __________                                                                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
39.1
Translation
(A)
0.3
Closure
(%)
100.0
Bending Residues
( green )
  132 - 136
  309 - 310
  399 - 406
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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