Alpha-Trehalose-Phosphate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Alpha-Trehalose-Phosphate Synthase
  Conformer 1
(PDB)
1gz5 (C)
  Conformer 2
(PDB)
1uqt (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 416 0.67   3 - 11   38 - 55   62 - 454
2 26 1.47   12 - 37   56 - 61

Sequence


           _____6_____________________________37______________53______61___________________________________________________________ 
 1gz5(C) : SRLVVVSNRIAPPDEHAASAGGLAVGILGALKAAGGLWFGWSGETGNEDQPLKKVKKGNITWASFNLSEQDLDEYYNQFSNAVLWPAFHYRLDLVQFQRPAWDGYLRVNALLADKLLPLL 
         :                                                                                                                          
 1uqt(B) : SRLVVVSNRIAPP------aGGLAVGILGALKAAGGLWFGWSGETGNEDQPLKKVKKGNITWASFNLSEQDLDEYYNQFSNAVLWPAFHYRLDLVQFQRPAWDGYLRVNALLADKLLPLL 
           _____6_____________________________37______________53______61___________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1gz5(C) : QDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGPL 
         :                                                                                                                          
 1uqt(B) : QDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGPL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1gz5(C) : PPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLL-kIFRYSDVGLVTPLR 
         :                                                                                                                          
 1uqt(B) : PPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLR 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________                         
 1gz5(C) : DG-nLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALIVNPYDRDEVAAALDRALT-sLAERISRHAE-lDVIVKNDINHWQECFISDLKQIVPR                         
         :                                                                                                                          
 1uqt(B) : DGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQIVPR                         
           ________________________________________________________________________________________________                         

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
21.3
Translation
(A)
0.5
Closure
(%)
68.0
Bending Residues
( green )
  6 - 20
  37 - 38
  53 - 56
  61 - 62
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: null

No Contacts

PyMOL Script

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