Alpha-1-Antichymotrypsin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Alpha-1-Antichymotrypsin
  Conformer 1
(PDB)
1qmn (A)
  Conformer 2
(PDB)
2ach (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 295 1.11   32 - 159   184 - 348
2 20 8.72   160 - 183

Sequence


           ________________________________________________________________________________________________________________________ 
 1qmn(A) : **LASANVDFAFSLYKQLVLKAPDKNVIFSPPSISTALAFLSLGAHNTTLTEILKGLKFNLTETSEAEIHQSFQHLLRTLNQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAF 
         :                                                                                                                          
 2ach(A) : LGLASANVDFAFSLYKQLVLKAPDKNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLTETSEAEIHQSFQHLLRTLNQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAF 
           ________________________________________________________________________________________________________________________ 

           ______152____________________________183________________________________________________________________________________ 
 1qmn(A) : ATDFQDSAAAKKLINDYVKNGTRGKITDLI----sQTMMVLVNYIFFKAKWEMPFDPQDTHQSRFYLSKKKWVMVPMMSLHHLTIPYFRDEELSCTVVELKYTGNASALFILPDQDKMEE 
         :                                                                                                                          
 2ach(A) : ATDFQDSAAAKKLINDYVKNGTRGKITDLIKDLDSQTMMVLVNYIFFKAKWEMPFDPQDTHQSRFYLSKKKWVMVPMMSLHHLTIPYFRDEELSCTVVELKYTGNASALFILPDQDKMEE 
           ______152____________________________183________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1qmn(A) : VEAMLLPETLKRWRDSLEFREIGELYLPKFSISRDYNLNDILLQLGIEEAFTSKADLSGITGARNLAVSQVVHKAVLDVFEEGTEASAATAlSALVETRTIVRFNRPFLMIIVPTDTQNI 
         :                                                                                                                          
 2ach(A) : VEAMLLPETLKRWRDSLEFREIGELYLPKFSISRDYNLNDILLQLGIEEAFTSKADLSGITGARNLAVSQVVHKAVLDVFEEGTEASAATAVKITLL*********************** 
           ________________________________________________________________________________________________________________________ 

           ___________                                                                                                              
 1qmn(A) : FFMSKVTNPKQ                                                                                                              
         :                                                                                                                          
 2ach(A) : ***********                                                                                                              
           ___________                                                                                                              

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
75.0
Translation
(A)
5.9
Closure
(%)
25.1
Bending Residues
( green )
  152 - 160
  183 - 184
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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