Anthrax Protective Antigen

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Anthrax Protective Antigen
  Conformer 1
(PDB)
1acc  
  Conformer 2
(PDB)
1t6b (X)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 498 0.73   158 - 188   192 - 200   211 - 213   221 - 240   243 - 733
2 158 0.66   18 - 157   189 - 191   201 - 210   214 - 220   241 - 242

Sequence


           ________________________________________________________________________________________________________________________ 
 1acc    : SSSQGLLGYYFSDLNFQAPMVVTSSTTGDLSIPSSELENIPSENQYFQSAIWSGFIKVKKSDEYTFATSADNHVTMWVDDQEVIN----sNKIRLEKGRLYQIKIQYQRENPTEKGLDFK 
         :                                                                                                                          
 1t6b(X) : **SQGLLGYYFSDLNFQAPMVVTSSTTGDLSIPSSELENIPSENQYFQSAIWSGFIKVKKSDEYTFATSADNHVTMWVDDQEVINKASNSNKIRLEKGRLYQIKIQYQRENPTEKGLDFK 
           ________________________________________________________________________________________________________________________ 

           _____________________157_______________188___________________210_______220_________________240__________________________ 
 1acc    : LYWTDSQNKKEVISSDNLQLPELKQKSSvPDRDNDGIPDSLEVEGYTVDVKNKRTFLSPWISNIHEKKGLTKYKSSPEKWSTASDPYSDFEKVTGRIDKNVSPEARHPLVAAYPIVHVDM 
         :                                                                                                                          
 1t6b(X) : LYWTDSQNKKEVISSDNLQLPELKQ---vPDRDNDGIPDSLEVEGYTVDVKNKRTFLSPWISNIHEKKGLTKYKSSPEKWSTASDPYSDFEKVTGRIDKNVSPEARHPLVAAYPIVHVDM 
           _____________________157_______________188___________________210_______220_________________240__________________________ 

           ________________________________________________________________________________________________________________________ 
 1acc    : ENIILSKNEtISKNTSTSRTHTSEVvSAGFSNSNSSTVAIDHSLSLAG--------gLNTADTARLNANIRYVNTGTAPIYNVLPTTSLVLGKNQTLATIKAKENQLSQILAPNNYYPSK 
         :                                                                                                                          
 1t6b(X) : ENIILSKNEtISKNTSTSRTHTSEVvSAGFSNSNSSTVAIDHSLSLAGERTWAETMGLNTADTARLNANIRYVNTGTAPIYNVLPTTSLVLGKNQTLATIKAKENQLSQILAPNNYYPSK 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1acc    : NLAPIALNAQDDFSSTPITMNYNQFLELEKTKQLRLDTDQVYGNIATYNFENGRVRVDTGSNWSEVLPQIQETTARIIFNGKDLNLVERRIAAVNPS----tTKPDMTLKEALKIAFGFN 
         :                                                                                                                          
 1t6b(X) : NLAPIALNAQDDFSSTPITMNYNQFLELEKTKQLRLDTDQVYGNIATYNFENGRVRVDTGSNWSEVLPQIQETTARIIFNGKDLNLVERRIAAVNPSDPLETTKPDMTLKEALKIAFGFN 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1acc    : EPNGNLQYQGKDITEFDFNFDQQTSQNIKNQLAELNATNIYTVLDKIKLNAKMNILIRDKRFHYDRNNIAVGADESVVKEAHREVINSSTEGLLLNIDKDIRKILSGYIVEIEDTEGLKE 
         :                                                                                                                          
 1t6b(X) : EPNGNLQYQGKDITEFDFNFDQQTSQNIKNQLAELNATNIYTVLDKIKLNAKMNILIRDKRFHYDRNNIAVGADESVVKEAHREVINSSTEGLLLNIDKDIRKILSGYIVEIEDTEGLKE 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________                                        
 1acc    : VINDRYDMLNISSLRQDGKTFIDFKKYNDKLPLYISNPNYKVNVYAVTKENTIINPSENGDTSTNGIKKILIFSKKGYEIG                                        
         :                                                                                                                          
 1t6b(X) : VINDRYDMLNISSLRQDGKTFIDFKKYNDKLPLYISNPNYKVNVYAVTKENTIINPSENGDTSTNGIKKILIFSKKGYEIG                                        
           _________________________________________________________________________________                                        

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.0
Translation
(A)
0.1
Closure
(%)
52.7
Bending Residues
( green )
  157 - 158
  188 - 189
  191 - 201
  210 - 211
  213 - 214
  220 - 221
  240 - 243
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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