Antigen Peptide Transporter 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Antigen Peptide Transporter 1
  Conformer 1
(PDB)
2ixg (A)
  Conformer 2
(PDB)
2ixe (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 191 1.13   472 - 570   580 - 584   586 - 586   588 - 588   621 - 623   635 - 716
2 46 0.56   571 - 579   585 - 585   587 - 587   589 - 612   624 - 634

Sequence


           ________________________________________________________________________________________________565__________578___584__ 
 2ixg(A) : LSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTM 
         :                                                                                                                          
 2ixe(A) : **GSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTM 
           ________________________________________________________________________________________________565__________578___584__ 

           _______________________612___________________634________________________________________________________________________ 
 2ixg(A) : EEITAVAMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQL 
         :                                                                                                                          
 2ixe(A) : EEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQL 
           _______________________612___________________634________________________________________________________________________ 

           ______________                                                                                                           
 2ixg(A) : MERGGCYRSMVEAL                                                                                                           
         :                                                                                                                          
 2ixe(A) : MERGGCYRSMVEA*                                                                                                           
           ______________                                                                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.8
Translation
(A)
-0.6
Closure
(%)
48.9
Bending Residues
( green )
  565 - 572
  578 - 582
  584 - 589
  612 - 624
  634 - 635
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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