Anti-Idiotypic Monoclonal Antibody (Light Chain)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Anti-Idiotypic Monoclonal Antibody (Light Chain)
  Conformer 1
(PDB)
2aab (L)
  Conformer 2
(PDB)
1iqw (L)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 107 0.57   3 - 105
2 104 0.42   106 - 209

Sequence


           _________________________________________________________________________________________________________104____________ 
 2aab(L) : DIQLTQSPASLAVSLGQRVTISCRASESVEYYGSSLMQWYQQKPGQPPKLLIYAASNVESGVPARFSGSGSGTDFSLNIHPVEEDDIAMYFCQQSRKIPYTFGGGTKLEIKRADAAPTVS 
         :                                                                                                                          
 1iqw(L) : DIVLTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQQKPGQPPKLLIYAASNLESGIPARFSGSGSGTDFTLNIHPVEEEDAATYYCQQSNEDPRTFGGGTKLEIKRADAAPTVS 
           _________________________________________________________________________________________________________108____________ 

           _________________________________________________________________________________________________                        
 2aab(L) : IFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRGE                        
         :                                                                                                                          
 1iqw(L) : IFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR**                        
           _________________________________________________________________________________________________                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
41.7
Translation
(A)
-1.2
Closure
(%)
90.8
Bending Residues
( green )
  104 - 108
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download