Argininosuccinate Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Argininosuccinate Synthetase
  Conformer 1
(PDB)
1kp3 (A)
  Conformer 2
(PDB)
1k92 (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 409 0.87   4 - 116   123 - 124   126 - 152   168 - 441
2 22 0.95   117 - 122   125 - 125   153 - 167

Sequence


           _________________________________________________________________________________________________________________116___1 
 1kp3(A) : TTILKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKED 
         :                                                                                                                          
 1k92(A) : TTILKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKED 
           _________________________________________________________________________________________________________________116___1 

           22___________________________152____________167_________________________________________________________________________ 
 1kp3(A) : GVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEYLNSSVKIVNPIMGVKFWDESVKIPAEEVTVRF 
         :                                                                                                                          
 1k92(A) : GVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEYLNSSVKIVNPIMGVKFWDESVKIPAEEVTVRF 
           22___________________________152____________167_________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1kp3(A) : EQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHAHGRQLGRLLYQGRWFDSQALMLRDSLQRWVASQITGEVT 
         :                                                                                                                          
 1k92(A) : EQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHAHGRQLGRLLYQGRWFDSQALMLRDSLQRWVASQITGEVT 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________                                   
 1kp3(A) : LELRRGNDYSILNTVSENLTYKPER-------sVFSPDDRIGQLTMRNLDITDTREKLFGYAKTGLLSSSAASGVPQVENLENKGQ                                   
         :                                                                                                                          
 1k92(A) : LELRRGNDYSILNTVSENLTYKPERLTMEKGDSVFSPDDRIGQLTMRNLDITDTREKLFGYAKTGLLSSSAASGVPQVENLENK**                                   
           ______________________________________________________________________________________                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.8
Translation
(A)
0.3
Closure
(%)
99.4
Bending Residues
( green )
  116 - 117
  122 - 127
  152 - 153
  167 - 168
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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