Aspartyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aspartyl-Trna Synthetase
  Conformer 1
(PDB)
1eov (A)
  Conformer 2
(PDB)
1asy (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 311 1.02   232 - 235   240 - 244   248 - 376   381 - 553
2 171 0.96   74 - 231   236 - 239   245 - 247   377 - 380   554 - 555

Sequence


           ________________________________________________________________________________________________________________________ 
 1eov(A) : ***AKDNYGKLPLIQSRDSDRTGQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNL 
         :                                                                                                                          
 1asy(A) : EDTAKDNYGKLPLIQSRDSDRTGQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNL 
           ________________________________________________________________________________________________________________________ 

           _________________________________________231_235_239__244_______________________________________________________________ 
 1eov(A) : EIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQ 
         :                                                                                                                          
 1asy(A) : EIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQ 
           _________________________________________231_235_239__244_______________________________________________________________ 

           __________________________________________________________________376_380_______________________________________________ 
 1eov(A) : QLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENE 
         :                                                                                                                          
 1asy(A) : QLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENE 
           __________________________________________________________________376_380_______________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1eov(A) : KFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASL 
         :                                                                                                                          
 1asy(A) : KFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASL 
           ________________________________________________________________________________________________________________________ 

           ___553____                                                                                                               
 1eov(A) : FPRDPKRLRP                                                                                                               
         :                                                                                                                          
 1asy(A) : FPRDPKRLRP                                                                                                               
           ___553____                                                                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.1
Translation
(A)
0.3
Closure
(%)
59.6
Bending Residues
( green )
  231 - 232
  235 - 236
  239 - 240
  244 - 245
  247 - 248
  376 - 377
  380 - 381
  553 - 554
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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