Atp-Dependent Molecular Chaperone Hsp82

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp-Dependent Molecular Chaperone Hsp82
  Conformer 1
(PDB)
2cg9 (A)
  Conformer 2
(PDB)
2cge (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 220 2.35   276 - 481   497 - 519
2 152 2.01   482 - 496   520 - 669

Sequence


           ________________________________________________________________________________________________________________________ 
 2cg9(A) : ASETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFG 
         :                                                                                                                          
 2cge(A) : ************************************************************************************************************************ 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2cg9(A) : VGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEeEVQEIEELNKTKPLWTRNPSDITQ 
         :                                                                                                                          
 2cge(A) : **********************************************************************************************************TKPLWTRNPSDITQ 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2cg9(A) : EEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPF---------nNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNE 
         :                                                                                                                          
 2cge(A) : EEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNE 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________481____________496_________________516__________ 
 2cg9(A) : IAEDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITK 
         :                                                                                                                          
 2cge(A) : IAEDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITK 
           ________________________________________________________________________481____________496_________________516__________ 

           ________________________________________________________________________________________________________________________ 
 2cg9(A) : DFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQA-------------kTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLL 
         :                                                                                                                          
 2cge(A) : DFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLL 
           ________________________________________________________________________________________________________________________ 

           _______________________________                                                                                          
 2cg9(A) : YETALLTSGFSLDEPTSFASRINRLISLGLN                                                                                          
         :                                                                                                                          
 2cge(A) : YETALLTSGFSLDEPTSFASRINRLISLGLN                                                                                          
           _______________________________                                                                                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
19.7
Translation
(A)
-2.7
Closure
(%)
95.5
Bending Residues
( green )
  481 - 488
  496 - 497
  516 - 523
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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