Atp-Dependent Molecular Chaperone Hsp82

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp-Dependent Molecular Chaperone Hsp82
  Conformer 1
(PDB)
2cg9 (A)
  Conformer 2
(PDB)
2cg9 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 468 0.71   4 - 525
2 137 0.05   526 - 675

Sequence


           ________________________________________________________________________________________________________________________ 
 2cg9(A) : ASETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFG 
         :                                                                                                                          
 2cg9(B) : ASETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFG 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2cg9(A) : VGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEeEVQEIEELNKTKPLWTRNPSDITQ 
         :                                                                                                                          
 2cg9(B) : VGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEeEVQEIEELNKTKPLWTRNPSDITQ 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2cg9(A) : EEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPF---------nNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNE 
         :                                                                                                                          
 2cg9(B) : EEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNE 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________________________________522____ 
 2cg9(A) : IAEDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITK 
         :                                                                                                                          
 2cg9(B) : IAEDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITK 
           _________________________________________________________________________________________________________________522____ 

           ________________________________________________________________________________________________________________________ 
 2cg9(A) : DFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQAkTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLD 
         :                                                                                                                          
 2cg9(B) : DFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQAkTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLD 
           ________________________________________________________________________________________________________________________ 

           __________________                                                                                                       
 2cg9(A) : EPTSFASRINRLISLGLN                                                                                                       
         :                                                                                                                          
 2cg9(B) : EPTSFASRINRLISLGLN                                                                                                       
           __________________                                                                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.4
Translation
(A)
0.9
Closure
(%)
86.7
Bending Residues
( green )
  522 - 527
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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