Atp-Dependent Molecular Chaperone Hsp82

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp-Dependent Molecular Chaperone Hsp82
  Conformer 1
(PDB)
2akp (A)
  Conformer 2
(PDB)
2iwx (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 153 1.92   32 - 93   115 - 205
2 21 3.7   94 - 114

Sequence


           __________________________________________________________________________________________92___________________114______ 
 2akp(A) : **************************KEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQF 
         :                                                                                                                          
 2iwx(A) : MASETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQF 
           __________________________________________________________________________________________92___________________114______ 

           ______________________________________________________________________________________________                           
 2akp(A) : GVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVT****                           
         :                                                                                                                          
 2iwx(A) : GVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVE                           
           ______________________________________________________________________________________________                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
66.2
Translation
(A)
2.4
Closure
(%)
90.2
Bending Residues
( green )
  92 - 94
  114 - 125
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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