Atp Phosphoribosyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp Phosphoribosyltransferase
  Conformer 1
(PDB)
1nh8 (A)
  Conformer 2
(PDB)
1nh7 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 198 1.09   3 - 209
2 72 0.87   210 - 282

Sequence


           ________________________________________________________________________________________________________________________ 
 1nh8(A) : MLRVAVPNKGALSEPATEILAEAGYRRRTDSKDLTVIDPVNNVEFFFLRPKDIAIYVGSGELDFGITGRDLVCDSGAQVRERLALGFGSSSFRYAAPAGRNWTTADLAGMRIATAYPNLV 
         :                                                                                                                          
 1nh7(A) : MLRVAVPNKGALSEPATEILAEAGYRRRTDSKDLTVIDPVNNVEFFFLRPKDIAIYVGSGELDFGITGRDLVCDSGAQVRERLALGFGSSSFRYAAPAGRNWTTADLAGMRIATAYPNLV 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________209_______________________________________ 
 1nh8(A) : RKDLATKGIEATVIRLDGAVEISVQLGVADAIADVVGSGRTLSQHDLVAFGEPLCDSEAVLIERAeARDQLVARVQGVVFGQQYLMLDYDCPRSALKKATAITPGLESPTIAPLADPDWV 
         :                                                                                                                          
 1nh7(A) : RKDLATKGIEATVIRLDGAVEISVQLGVADAIADVVGSGRTLSQHDLVAFGEPLCDSEAVLIER-eARDQLVARVQGVVFGQQYLMLDYDCPRSALKKATAITPGL-sPTIAPLADPDWV 
           ______________________________________________________________________________209_______________________________________ 

           ____________________________________                                                                                     
 1nh8(A) : AIRALVPRRDVNGIMDELAAIGAKAILASDIRFCRF                                                                                     
         :                                                                                                                          
 1nh7(A) : AIRALVPRRDVNGIMDELAAIGAKAILASDIRFCRF                                                                                     
           ____________________________________                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
38.5
Translation
(A)
-1.6
Closure
(%)
99.8
Bending Residues
( green )
  209 - 210
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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