Atp Synthase Epsilon Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp Synthase Epsilon Subunit
  Conformer 1
(PDB)
1fs0 (E)
  Conformer 2
(PDB)
1aqt  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 24 3.64   81 - 104
2 77 0.64   4 - 80
3 22 2.05   111 - 132

Sequence


           ______________________________________________________________________________80_____________________104________________ 
 1fs0(E) : AMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLADTAIRGQDLDEARAMEAKRKAEEH------dVDYAQASAE 
         :                                                                                                                          
 1aqt    : *STYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAE 
           ______________________________________________________________________________80_____________________104________________ 

           ________________                                                                                                         
 1fs0(E) : LAKAIAQLRVIELT**                                                                                                         
         :                                                                                                                          
 1aqt    : LAKAIAQLRVIELTKK                                                                                                         
           ________________                                                                                                         

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
118.5
Translation
(A)
-2.6
Closure
(%)
32.0
Bending Residues
( green )
  80 - 81
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
135.7
Translation
(A)
-10.1
Closure
(%)
74.2
Bending Residues
( green )
  104 - 114
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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