Autoinducer 2 Sensor Kinase/phosphatase Luxq

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Autoinducer 2 Sensor Kinase/phosphatase Luxq
  Conformer 1
(PDB)
2hj9 (C)
  Conformer 2
(PDB)
2hj9 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 105 0.72   60 - 78   109 - 109   111 - 111   131 - 134   155 - 166   191 - 268
2 94 0.54   79 - 108   110 - 110   112 - 130   135 - 154   167 - 190

Sequence


           _________________________78___________________________108__________________129__134_________________154_________166_____ 
 2hj9(C) : SKQQTSALIHNIFDSHFAAIQIHHDSNSKSEVIRDFYTDRDTDVLNFFFLSIDQSDPSHTPEFRFLTDHKGIIWDDGNAHFYGVNDLILDSLANRVSFSNNWYYINVMTSIGSRHMLVRR 
         :                                                                                                                          
 2hj9(D) : ******ALIHNIFDSHFAAIQIHHDSNSKSEVIRDFYTDRDTDVLNFFFLSIDQSDPSHTPEFRFLTDHKGIIWDDGNAHFYGVNDLILDSLANRVSFSNNWYYINVMTSIGSRHMLVRR 
           _________________________78___________________________108__________________129__134_________________154_________166_____ 

           ________________190_______________________________________________________________________                               
 2hj9(C) : VPILDPSTGEVLGFSFNAVVLDNNFALMEKLKSESNVDNVVLVANSVPLANSLIGDEPYNVADVLQRlLVIETPIVVNAVTTELCLLTVQ                               
         :                                                                                                                          
 2hj9(D) : VPILDPSTGEVLGFSFNAVVLDNNFALMEKLKSESNVDNVVLVANSVPLANSLIGDEPYNVADVLQ-lLVIETPIVVNAVTTELCLLTVQ                               
           ________________190_______________________________________________________________________                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.5
Translation
(A)
0.2
Closure
(%)
50.2
Bending Residues
( green )
  78 - 79
  108 - 112
  129 - 131
  134 - 135
  154 - 155
  166 - 167
  190 - 191
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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