Autolysin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Autolysin
  Conformer 1
(PDB)
1gvm (F)
  Conformer 2
(PDB)
1h8g (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 56 0.96   228 - 281   296 - 300
2 30 2.36   282 - 295   301 - 316

Sequence


           ______________________________________________________________________________________________281___________295__300____ 
 1gvm(F) : GGIVHSDGSYPKDKFEKINGTWYYFDSSGYMLADRWRKHTDGNWYWFDNSGEMATGWKKIADKWYYFNEEGAMKTGWVKYKDTWYYLDAKEGAMVSNAFIQSADGTGWYYLKPDGTLADR 
         :                                                                                                                          
 1h8g(A) : ***************************************TDGNWYWFDNSGE-aTGWKKIADKWYYFNEEGA-kTGWVKYKDTWYYLDAKEGA-vSNAFIQSADGTGWYYLKPDGTLADR 
           ______________________________________________________________________________________________281___________295__300____ 

           ______________                                                                                                           
 1gvm(F) : PEFTVEPDGLITVK                                                                                                           
         :                                                                                                                          
 1h8g(A) : PEFTVEPDGLITVK                                                                                                           
           ______________                                                                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
33.0
Translation
(A)
0.4
Closure
(%)
89.4
Bending Residues
( green )
  281 - 282
  295 - 296
  300 - 301
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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