B-Cell Mitogen

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name B-Cell Mitogen
  Conformer 1
(PDB)
1w62 (B)
  Conformer 2
(PDB)
1w61 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 188 0.69   130 - 132   184 - 367   392 - 392
2 159 0.87   46 - 129   133 - 183   368 - 391

Sequence


           __________________________________________________________________________________126___________________________________ 
 1w62(B) : **KSFTCIDMHTEGEAARIVTSGLPHIPGSNMAEKKAYLQENMDYLRRGIMLEPRGHDDMFGAFLFDPIEEGADLGIVFMDTGGYLNMCGHNSIAAVTAAVETGIVSVPAKATNVPVVLD 
         :                                                                                                                          
 1w61(B) : FKKSFTCIDMHTEGEAARIVTSGLPHIPGSNMAEKKAYLQENMDYLRRGIMLEPRGHDDMFGAFLFDPIEEGADLGIVFMDTGGYLNMCGHNSIAAVTAAVETGIVSVPAKATNVPVVLD 
           __________________________________________________________________________________126___________________________________ 

           ___________________183__________________________________________________________________________________________________ 
 1w62(B) : TPAGLVRGTAHLQSGTESEVSNASIINVPSFLYQQDVVVVLPKPYGEVRVDIAFGGNFFAIVPAEQLGIDISVQNLSRLQEAGELLRTEINRSVKVQHPQLPHINTVDCVEIYGPPTNPE 
         :                                                                                                                          
 1w61(B) : TPAGLVRGTAHLQSGTESEVSNASIINVPSFLYQQDVVVVLPKPYGEVRVDIAFGGNFFAIVPAEQLGIDISVQNLSRLQEAGELLRTEINRSVKVQHPQLPHINTVDCVEIYGPPTNPE 
           ___________________183__________________________________________________________________________________________________ 

           ___________________________________________________________________________________367_____________________391_______    
 1w62(B) : ANYKNVVIFGNRQADRSPCGTGTSAKMATLYAKGQLRIGETFVYESILGSLFQGRVLGEERIPGVKVPVTKDAEEGMLVVTAEITGKAFIMGFNTMLFDPTDPFKNGFTLKQY****    
         :                                                                                                                          
 1w61(B) : ANYKNVVIFGNRQADRSPCGTGTSAKMATLYAKGQLRIGETFVYESILGSLFQGRVLGEERIPGVKVPVTKDAEEGMLVVTAEITGKAFIMGFNTMLFDPTDPFKNGFTLKQYIWSS    
           ___________________________________________________________________________________367_____________________391_______    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.2
Translation
(A)
-0.4
Closure
(%)
96.0
Bending Residues
( green )
  126 - 133
  183 - 184
  367 - 368
  391 - 392
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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