Beta-Secretase 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-Secretase 1
  Conformer 1
(PDB)
2ohr (A)
  Conformer 2
(PDB)
1w50 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 250 0.62   1 - 203   225 - 228   277 - 277   287 - 296   310 - 310   334 - 367   372 - 378
2 123 0.93   204 - 224   229 - 276   278 - 286   297 - 309   311 - 333   368 - 371   379 - 383

Sequence


           ________________________________________________________________________________________________________________________ 
 2ohr(A) : FVEMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGI 
         :                                                                                                                          
 1w50(A) : FVEMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________203__________________224_228____________________ 
 2ohr(A) : LGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAaSVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSI 
         :                                                                                                                          
 1w50(A) : LGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAaSVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSI 
           ________________________________________________________________________203__________________224_228____________________ 

           _________________________276_______286_______296__________309_____________________333_______________________________367_ 
 2ohr(A) : KAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTA 
         :                                                                                                                          
 1w50(A) : KAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTA 
           _________________________276_______286_______296__________309_____________________333_______________________________367_ 

           371____378_______                                                                                                        
 2ohr(A) : AVEGPFVTLDMEDCGYN                                                                                                        
         :                                                                                                                          
 1w50(A) : AVEGPFVTLDMEDCGYN                                                                                                        
           371____378_______                                                                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.5
Translation
(A)
0.0
Closure
(%)
29.5
Bending Residues
( green )
  203 - 204
  224 - 225
  228 - 229
  276 - 278
  286 - 287
  296 - 297
  309 - 311
  333 - 338
  367 - 368
  371 - 372
  378 - 379
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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