Caffeic Acid 3-O-Methyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Caffeic Acid 3-O-Methyltransferase
  Conformer 1
(PDB)
1kyw (A)
  Conformer 2
(PDB)
1kyz (E)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 235 0.82   21 - 204   221 - 226   263 - 267   294 - 294   300 - 326   330 - 338   349 - 349   353 - 354
2 104 0.64   205 - 220   227 - 262   268 - 293   295 - 299   327 - 329   339 - 348   350 - 352   355 - 359

Sequence


           ________________________________________________________________________________________________________________________ 
 1kyw(A) : ********HISDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSI 
         :                                                                                                                          
 1kyz(E) : GETQITPTHISDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSI 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________204_____________220___226__________________ 
 1kyw(A) : SALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPG 
         :                                                                                                                          
 1kyz(E) : SALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPG 
           _____________________________________________________________________________204_____________220___226__________________ 

           _______________262__267_________________287_________299_____________________323____________338_______348_352____________ 
 1kyw(A) : VEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFL** 
         :                                                                                                                          
 1kyz(E) : VEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFLKK 
           _______________262__267_________________287_________299_____________________323____________338_______348_352____________ 

           _                                                                                                                        
 1kyw(A) : *                                                                                                                        
         :                                                                                                                          
 1kyz(E) : V                                                                                                                        
           _                                                                                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.8
Translation
(A)
0.0
Closure
(%)
63.4
Bending Residues
( green )
  204 - 205
  220 - 221
  226 - 227
  262 - 263
  267 - 268
  287 - 295
  299 - 300
  323 - 330
  338 - 339
  348 - 350
  352 - 355
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download