Calcium And Integrin Binding 1 (Calmyrin)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calcium And Integrin Binding 1 (Calmyrin)
  Conformer 1
(PDB)
1y1a (A)
  Conformer 2
(PDB)
1xo5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 86 2.74   18 - 18   20 - 104
2 80 2.72   14 - 17   19 - 19   105 - 185

Sequence


           ____14___________________________________________________________________________________99_____________________________ 
 1y1a(A) : SKELLAEYQDLTFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDL 
         :                                                                                                                          
 1xo5(A) : ***LLAEYQDLTFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDL 
           ____14___________________________________________________________________________________99_____________________________ 

           _______________________________________________________________                                                          
 1y1a(A) : SRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRSPDFASSFKIVL                                                          
         :                                                                                                                          
 1xo5(A) : SRLVNCLT------rLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRSPDFASSFKIVL                                                          
           _______________________________________________________________                                                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
170.2
Translation
(A)
-4.3
Closure
(%)
84.9
Bending Residues
( green )
  14 - 20
  99 - 106
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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