Calmodulin Cmd-1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin Cmd-1
  Conformer 1
(PDB)
1prw (A)
  Conformer 2
(PDB)
1g4y (R)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 77 2.69   3 - 79
2 65 2.68   80 - 145

Sequence


           _________________________________________________________________________75_____________________________________________ 
 1prw(A) : ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE-lTDEE 
         :                                                                                                                          
 1g4y(R) : ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEE 
           _________________________________________________________________________75_____________________________________________ 

           ____________________________                                                                                             
 1prw(A) : VDEMIREADIDGDGQVNYEEFVQMMTAK                                                                                             
         :                                                                                                                          
 1g4y(R) : VDEMIREADIDGDGQVNYEEFVQMMTA*                                                                                             
           ____________________________                                                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
57.3
Translation
(A)
-7.7
Closure
(%)
83.7
Bending Residues
( green )
  75 - 80
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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