Calmodulin Cmd-1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin Cmd-1
  Conformer 1
(PDB)
1prw (A)
  Conformer 2
(PDB)
1niw (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 67 2.08   10 - 81
2 59 0.89   82 - 143

Sequence


           _______________________________________________________________________________81_______________________________________ 
 1prw(A) : ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE-lTDEE 
         :                                                                                                                          
 1niw(E) : **QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTV-rSLGQNPTEAELQD-iNEVDADGNGTIDFPEFLT--aRK-kDTDSEEEIREAFRVFDKDGNGYISAAELRHV-tNLGEKLTDEE 
           _______________________________________________________________________________81_______________________________________ 

           ____________________________                                                                                             
 1prw(A) : VDEMIREADIDGDGQVNYEEFVQMMTAK                                                                                             
         :                                                                                                                          
 1niw(E) : VDE-iREADIDGDGQVNYEEFVQtA***                                                                                             
           ____________________________                                                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
35.6
Translation
(A)
0.6
Closure
(%)
97.6
Bending Residues
( green )
  81 - 82
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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