Capsid Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Capsid Protein
  Conformer 1
(PDB)
1ihm (B)
  Conformer 2
(PDB)
1ihm (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 406 0.61   2035 - 2071   2086 - 2111   2123 - 2125   2157 - 2179   2202 - 2518
2 82 0.8   2031 - 2034   2072 - 2085   2112 - 2122   2126 - 2156   2180 - 2201

Sequence


           _____________________2034_________________________________2071__________2085_____________________2110________2122_______ 
 1ihm(B) : SSVDGASGAGQLVPEVNASDPLAMDPVAGSSTAVATAGQVNPIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLSLGPHLNPFLLHLSQMYNGWVGNMRVRIMLAGNAFTAGKIIVSCIP 
         :                                                                                                                          
 1ihm(A) : *******************DPLAMDPVAGSSTAVATAGQVNPIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLSLGPHLNPFLLHLSQMYNGWVGNMRVRIMLAGNAFTAGKIIVSCIP 
           _____________________1034_________________________________1071__________1085_____________________1110________1122_______ 

           _______________________2156____________2172_________________________2201________________________________________________ 
 1ihm(B) : PGFGSHNLTIAQATLFPHVIADVRTLDPIEVPLEDVRNVLFHNNDRNQQTMRLVCMLYTPLRTGGGTGDSFVVAGRVMTCPSPDFNFLFLVPPTVEQKTRPFTLPNLPLSSLSNSRAPLP 
         :                                                                                                                          
 1ihm(A) : PGFGSHNLTIAQATLFPHVIADVRTLDPIEVPLEDVRNVLFHNNDRNQQTMRLVCMLYTPLRTGGGTGDSFVVAGRVMTCPSPDFNFLFLVPPTVEQKTRPFTLPNLPLSSLSNSRAPLP 
           _______________________1156____________1172_________________________1201________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ihm(B) : ISSMGISPDNVQSVQFQNGRCTLDGRLVGTTPVSLSHVAKIRGTSNGTVINLTELDGTPFHPFEGPAPIGFPDLGGCDWHINMTQFGHSSQTQYDVDTTPDTFVPHLGSIQANGIGSGNY 
         :                                                                                                                          
 1ihm(A) : ISSMGISPDNVQSVQFQNGRCTLDGRLVGTTPVSLSHVAKIRGTSNGTVINLTELDGTPFHPFEGPAPIGFPDLGGCDWHINMTQFGHSSQTQYDVDTTPDTFVPHLGSIQANGIGSGNY 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ihm(B) : VGVLSWISPPSHPSGSQVDLWKIPNYGSSITEATHLAPSVYPPGFGEVLVFFMSKMPGPGAYNLPCLLPQEYISHLASEQAPTVGEAALLHYVDPDTGRNLGEFKAYPDGFLTCVPNGAS 
         :                                                                                                                          
 1ihm(A) : VGVLSWISPPSHPSGSQVDLWKIPNYGSSITEATHLAPSVYPPGFGEVLVFFMSKMPGPGAYNLPCLLPQEYISHLASEQAPTVGEAALLHYVDPDTGRNLGEFKAYPDGFLTCVPNGAS 
           ________________________________________________________________________________________________________________________ 

           _______________________________                                                                                          
 1ihm(B) : SGPQQLPINGVFVFVSWVSRFYQLKPVGTAS                                                                                          
         :                                                                                                                          
 1ihm(A) : SGPQQLPINGVFVFVSWVSRFYQLKPVGTAS                                                                                          
           _______________________________                                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.2
Translation
(A)
0.5
Closure
(%)
82.9
Bending Residues
( green )
  2034 - 2044
  2071 - 2072
  2085 - 2086
  2110 - 2119
  2122 - 2123
  2125 - 2126
  2156 - 2158
  2172 - 2180
  2201 - 2202
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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