Carboxypeptidase 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Carboxypeptidase 1
  Conformer 1
(PDB)
1wgz (C)
  Conformer 2
(PDB)
1wgz (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 163 0.52   98 - 184   354 - 429
2 290 0.47   3 - 89   204 - 301   305 - 351   436 - 493
3 42 0.59   185 - 203   302 - 304   352 - 353   430 - 435   494 - 505

Sequence


           ______________________________________________________________________________________88________________________________ 
 1wgz(C) : MTPEAAYQNLLEFQRETAYLASLGALAAWDQRTMIPKKGHEHRARQMAALARLLHQRMTDPRIGEWLEKVEGSPLVQDPLSDAAVNVREWRQAYERARAIPERLAVELAQAESEAESFWE 
         :                                                                                                                          
 1wgz(A) : MTPEAAYQNLLEFQRETAYLASLGALAAWDQRTMIPKKGHEHRARQMAALARLLHQRMTDPRIGEWLEKVEGSPLVQDPLSDAAVNVREWRQAYERARAIPERLAVELAQAESEAESFWE 
           ______________________________________________________________________________________88________________________________ 

           _____________________________________________________________184________________203_____________________________________ 
 1wgz(C) : EARPRDDWRGFLPYLKRVYALTKEKAEVLFALPPAPGDPPYGELYDALLDGYEPGMRARELLPLFAELKEGLKGLLDRILGSGKRPDTSILHRPYPVEAQRRFALELLSACGYDLEAGRL 
         :                                                                                                                          
 1wgz(A) : EARPRDDWRGFLPYLKRVYALTKEKAEVLFALPPAPGDPPYGELYDALLDGYEPGMRARELLPLFAELKEGLKGLLDRILGSGKRPDTSILHRPYPVEAQRRFALELLSACGYDLEAGRL 
           _____________________________________________________________184________________203_____________________________________ 

           __________________________________________________________301________________________________________________352________ 
 1wgz(C) : DPTAHPFEIAIGPGDVRITTRYYEDFFNAGIFGTLHEMGHALYEQGLPKEHWGTPRGDAVSLGVHESQSRTWENLVGRSLGFWERFFPRAREVFASLGDVSLEDFHFAVNAVEPSLIRVE 
         :                                                                                                                          
 1wgz(A) : DPTAHPFEIAIGPGDVRITTRYYEDFFNAGIFGTLHEMGHALYEQGLPKEHWGTPRGDAVSLGVHESQSRTWENLVGRSLGFWERFFPRAREVFASLGDVSLEDFHFAVNAVEPSLIRVE 
           __________________________________________________________301________________________________________________352________ 

           __________________________________________________________________429___435_____________________________________________ 
 1wgz(C) : ADEVTYNLHILVRLELELALFRGELSPEDLPEAWAEKYRDHLGVAPKDYKDGVMQDVHWAGGLFGYFPTYTLGNLYAAQFFQKAEAELGPLEPRFARGEFQPFLDWTRARIHAEGSRFRP 
         :                                                                                                                          
 1wgz(A) : ADEVTYNLHILVRLELELALFRGELSPEDLPEAWAEKYRDHLGVAPKDYKDGVMQDVHWAGGLFGYFPTYTLGNLYAAQFFQKAEAELGPLEPRFARGEFQPFLDWTRARIHAEGSRFRP 
           __________________________________________________________________429___435_____________________________________________ 

           _______490____________________                                                                                           
 1wgz(C) : RVLVERVTGEAPSARPFLAYLEKKYAALYG                                                                                           
         :                                                                                                                          
 1wgz(A) : RVLVERVTGEAPSARPFLAYLEKKYAALYG                                                                                           
           _______490____________________                                                                                           

Morph

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Status: Initialising

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 19.9 -0.4 99.8   88 - 104 Bending Region Analysis
1 3 10.4 0.1 54.8   184 - 185   352 - 355   429 - 430 Bending Region Analysis
2 3 9.8 -0.3 42.5   203 - 204   301 - 302   304 - 305   351 - 353   435 - 436   490 - 494 Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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