Chaperone Protein Htpg

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Chaperone Protein Htpg
  Conformer 1
(PDB)
1y4s (B)
  Conformer 2
(PDB)
2ioq (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 435 2.99   26 - 100   117 - 481
2 22 5.05   12 - 25   101 - 108

Sequence


           _______________________25_____________________________________________________________________96_______106______________ 
 1y4s(B) : MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLES--------sQLI 
         :                                                                                                                          
 2ioq(B) : *******GFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLI 
           _______________________25_____________________________________________________________________96_______106______________ 

           ________________________________________________________________________________________________________________________ 
 1y4s(B) : GQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKREEKDGETVISWEKINKAQALWTRNKSE 
         :                                                                                                                          
 2ioq(B) : GQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKRe-----TVISWEKINKAQALWTRNKSE 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1y4s(B) : ITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQML 
         :                                                                                                                          
 2ioq(B) : ITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQML 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1y4s(B) : EKLAKDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPF 
         :                                                                                                                          
 2ioq(B) : EKLAKDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPF 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________________            
 1y4s(B) : QSV**********************************************************************************************************            
         :                                                                                                                          
 2ioq(B) : QSVSKVaKEAEKALTPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDAkYIFELNPDHVLVKRAADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLVS            
           _____________________________________________________________________________________________________________            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
165.3
Translation
(A)
-1.1
Closure
(%)
95.0
Bending Residues
( green )
  25 - 27
  96 - 101
  106 - 128
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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