Charged Multivesicular Body Protein 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Charged Multivesicular Body Protein 3
  Conformer 1
(PDB)
2gd5 (C)
  Conformer 2
(PDB)
2gd5 (D)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 65 0.35   20 - 87
2 41 1.08   18 - 19   88 - 136

Sequence


           ____________19__________________________________________________________81______________________________________________ 
 2gd5(C) : ******PKELVNEWSLKIRKErVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEiRSRKAVSKLYASKAHnSVLgkNQLAVL---gSLQKSTEVkAqSLVKIPEIQATrELSKE 
         :                                                                                                                          
 2gd5(D) : GAaEKPPKELVNEWSLKIRKErVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEiRSRKAVSKLYASKAHnSVLgkNQLAVLRVAGSLQKSTEVkAqSLVKIPEIQATrELSKE 
           ____________19__________________________________________________________81______________________________________________ 

           _____________________________                                                                                            
 2gd5(C) : kAGII----aEeIDRILFEITAGA*****                                                                                            
         :                                                                                                                          
 2gd5(D) : kAGIIEeEEAEeIDRILFEITAGALGKAP                                                                                            
           _____________________________                                                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.1
Translation
(A)
-0.2
Closure
(%)
89.9
Bending Residues
( green )
  19 - 20
  81 - 88
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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