Chitin Oligosaccharide Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Chitin Oligosaccharide Binding Protein
  Conformer 1
(PDB)
1zu0 (A)
  Conformer 2
(PDB)
1zty (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 281 0.44   3 - 242   486 - 526
2 243 0.43   243 - 485

Sequence


           ________________________________________________________________________________________________________________________ 
 1zu0(A) : RSELTIVPDFYPTMVRNFNPYLATNLRTTTDFIYEPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKAKPELDQRGINKWVTSVEKVDEYKVR 
         :                                                                                                                          
 1zty(A) : RSELTIVPDFYPTMVRNFNPYLATNLRTTTDFIYEPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKAKPELDQRGINKWVTSVEKVDEYKVR 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________________________________________24 
 1zu0(A) : FRLSEANSNVPYEISLIPIVAEHVWKDVKDPTTFTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQLLGKIVNSELDWTSSFVPDIDRTYAAANPNHHYWY 
         :                                                                                                                          
 1zty(A) : FRLSEANSNVPYEISLIPIVAEHVWKDVKDPTTFTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQLLGKIVNSELDWTSSFVPDIDRTYAAANPNHHYWY 
           ______________________________________________________________________________________________________________________24 

           1_______________________________________________________________________________________________________________________ 
 1zu0(A) : PAAGTQAFMVNFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPN 
         :                                                                                                                          
 1zty(A) : PAAGTQAFMVNFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPN 
           1_______________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1zu0(A) : GWTDFNNTVQLAVEQLQEVGIKAKARTPEFAVYNQAMLEGTYDVAYTNYFHGADPFTYWNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTI 
         :                                                                                                                          
 1zty(A) : GWTDFNNTVQLAVEQLQEVGIKAKARTPEFAVYNQAMLEGTYDVAYTNYFHGADPFTYWNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTI 
           ________________________________________________________________________________________________________________________ 

           483______________________________________________                                                                        
 1zu0(A) : PVMSGAWMYQYNTTRFTGWWSEENPKGRPSVWAGIPERLLHVLDLKPVK                                                                        
         :                                                                                                                          
 1zty(A) : PVMSGAWMYQYNTTRFTGWWSEENPKGRPSVWAGIPERLLHVLDLKPV*                                                                        
           483______________________________________________                                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
57.3
Translation
(A)
0.8
Closure
(%)
95.4
Bending Residues
( green )
  241 - 245
  483 - 489
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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