Class I Major Histocompatibility Antigen Rt1-Aa

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Class I Major Histocompatibility Antigen Rt1-Aa
  Conformer 1
(PDB)
1ed3 (A)
  Conformer 2
(PDB)
1kjm (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 180 0.47   3 - 182
2 91 0.53   183 - 273

Sequence


           ________________________________________________________________________________________________________________________ 
 1ed3(A) : GSHSLRYFYTAVSRPGLGEPRFIAVGYVDDTEFVRFDSDAENPRMEPRARWMEREGPEYWEQQTRIAKEWEQIYRVDLRTLRGYYNQSEGGSHTIQEMYGCDVGSDGSLLRGYRQDAYDG 
         :                                                                                                                          
 1kjm(A) : GSHSLRYFYTAVSRPGLGEPRFIAVGYVDDTEFVRFDSDAENPRMEPRARWMEREGPEYWEQQTRIAKEWEQIYRVDLRTLRGYYNQSEGGSHTIQEMYGCDVGSDGSLLRGYRQDAYDG 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________182__________________________________________________________ 
 1ed3(A) : RDYIALNEDLKTWTAADFAAQITRNKWERARYAERLRAYLEGTCVEWLSRYLELGKETLLRSDPPEAHVTLHPRPEGDVTLRCWALGFYPADITLTWQLNGEDLTQDMELVETRPAGDGT 
         :                                                                                                                          
 1kjm(A) : RDYIALNEDLKTWTAADFAAQITRNKWERARYAERLRAYLEGTCVEWLSRYLELGKETLLRSDPPEAHVTLHPRPEGDVTLRCWALGFYPADITLTWQLNGEDLTQDMELVETRPAGDGT 
           ___________________________________________________________182__________________________________________________________ 

           _____________________________________                                                                                    
 1ed3(A) : FQKWASVVVPLGKEQNYTCRVEHEGLPKPLSQRWE**                                                                                    
         :                                                                                                                          
 1kjm(A) : FQKWASVVVPLGKEQNYTCRVEHEGLPKPLSQRWEPL                                                                                    
           _____________________________________                                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.2
Translation
(A)
0.8
Closure
(%)
31.9
Bending Residues
( green )
  182 - 185
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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