2C-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 2C-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase
  Conformer 1
(PDB)
1h48 (E)
  Conformer 2
(PDB)
1h47 (C)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 123 0.28   7 - 56   77 - 149
2 20 0.99   57 - 76

Sequence


           ___________________________________________________52______________________76___________________________________________ 
 1h48(E) : EMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAED 
         :                                                                                                                          
 1h47(C) : EMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAED 
           ___________________________________________________52______________________76___________________________________________ 

           _____________________________________                                                                                    
 1h48(E) : LGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK                                                                                    
         :                                                                                                                          
 1h47(C) : LGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK                                                                                    
           _____________________________________                                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
24.4
Translation
(A)
-0.1
Closure
(%)
96.3
Bending Residues
( green )
  52 - 58
  76 - 77
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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