Complement C3 Alpha Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Complement C3 Alpha Chain
  Conformer 1
(PDB)
2ice (C)
  Conformer 2
(PDB)
2a74 (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 148 0.87   1337 - 1492   1536 - 1536
2 144 0.72   1493 - 1535   1537 - 1639

Sequence


           ________________________________________________________________________________________________________________________ 
 2ice(C) : TCNKFDLKVTIKPAPkNTMILEICTRYRGDQDATMSILDISMMTGFAPDTDDLKQLANGVDRYISKYELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNVELIQPGAVKVYAYYNL 
         :                                                                                                                          
 2a74(C) : TCNKFDLKVTIKPAPkNTMILEICTRYRGDQDATMSILDISMMTGFAPDTDDLKQLANGVDRYISKYELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNVELIQPGAVKVYAYYNL 
           ________________________________________________________________________________________________________________________ 

           _________________________1492___________________________________1533____________________________________________________ 
 2ice(C) : EESCTRFYHPEKEDGKLNKLCRDELCRCAEENCFIQKdKVTLEERLDKACEPGVDYVYKTRLVKVQLSNDFDEYIMAIEQTIKSGSDEVQVGQQRTFISPIKCREALKLEEKKHYLMWGL 
         :                                                                                                                          
 2a74(C) : EESCTRFYHPEKEDGKLNKLCRDELCRCAEENCFIQKdKVTLEERLDKACEPGVDYVYKTRLVKVQLSNDFDEYIMAIEQTIKSGSDEVQVGQQRTFISPIKCREALKLEEKKHYLMWGL 
           _________________________1492___________________________________1533____________________________________________________ 

           ________________________________________________________                                                                 
 2ice(C) : SSDFWGEKPNLSYIIGKDTWVEHWPEEDECQDEENQKQCQDLGAFTESMVVFGCPN                                                                 
         :                                                                                                                          
 2a74(C) : SSDFWGEKPNLSYIIGKDTWVEHWPEEDECQDEENQKQCQDLGAFTESMVVFGCPN                                                                 
           ________________________________________________________                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.6
Translation
(A)
0.8
Closure
(%)
55.6
Bending Residues
( green )
  1492 - 1493
  1533 - 1537
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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