Complement Decay-Accelerating Factor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Complement Decay-Accelerating Factor
  Conformer 1
(PDB)
1ok3 (B)
  Conformer 2
(PDB)
1ojw (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 192 0.74   39 - 39   41 - 43   63 - 251
2 54 0.45   5 - 38   40 - 40   44 - 62

Sequence


           ___________________________________38______________________62___________________________________________________________ 
 1ok3(B) : QDCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRSCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWST 
         :                                                                                                                          
 1ojw(B) : *DCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRSCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWST 
           ___________________________________38______________________62___________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ok3(B) : AVEFCKKKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFT-iGEHSIYCTVNNDE 
         :                                                                                                                          
 1ojw(B) : AVEFCKKKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDE 
           ________________________________________________________________________________________________________________________ 

           _____________                                                                                                            
 1ok3(B) : GEWSGPPPECRGC                                                                                                            
         :                                                                                                                          
 1ojw(B) : GEWSGPPPECRG*                                                                                                            
           _____________                                                                                                            

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.9
Translation
(A)
-0.3
Closure
(%)
82.2
Bending Residues
( green )
  38 - 44
  62 - 63
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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