Conserved Hypothetical Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Conserved Hypothetical Protein
  Conformer 1
(PDB)
2gnr (A)
  Conformer 2
(PDB)
2gnr (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 103 0.93   20 - 85   105 - 142
2 26 0.54   12 - 18   86 - 104

Sequence


           _________18________________________________________________________________85________________104________________________ 
 2gnr(A) : KEGSLLRWYDVeAERYEYTVGPAGEQFFNGLKQNKIIGSKCSKCGRIFVPARSYCEHCFVKIENYVEINKDEAYVDSYTIIYNDDEGNKLAQPVYIALIRFPNIEGGLLCYAEGNVKVGA 
         :                                                                                                                          
 2gnr(B) : **GSLLRWYDVeAERYEYT-gPAGEQFFNGLKQNKIIGSKCSKCGRIFVPARSYCEHCFVKIENYVEINKDEAYVDSYTIIYNDDEGNKLAQPVYIALIRFPNIEGGLLCYAEGNVKVGA 
           _________18________________________________________________________________85________________104________________________ 

           ________________                                                                                                         
 2gnr(A) : KAKILSFQWPLRVKVD                                                                                                         
         :                                                                                                                          
 2gnr(B) : KAKILSFQWPLRVKVD                                                                                                         
           ________________                                                                                                         

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.6
Translation
(A)
0.5
Closure
(%)
96.4
Bending Residues
( green )
  18 - 20
  85 - 86
  104 - 105
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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