Conserved Hypothetical Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Conserved Hypothetical Protein
  Conformer 1
(PDB)
2gk4 (A)
  Conformer 2
(PDB)
2gk4 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 156 0.43   4 - 9   23 - 90   143 - 226
2 52 0.98   10 - 22   91 - 142

Sequence


           _________9___________22________________________________________________________________90_______________________________ 
 2gk4(A) : *AkILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPEPHPNLSIREITNTKDLLIEqERVQDYQVLIHSaVSDYTPVYtGLEEVQASSNLKEFLSKQNHQA 
         :                                                                                                                          
 2gk4(B) : NAkILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPEPHPNLSIREITNTKDLLIEqERVQDYQVLIHSaVSDYTPVYtGLEEVQASSNLKEFLS------ 
           _________9___________22________________________________________________________________90_______________________________ 

           ____________137____________________________________________________________________________________________              
 2gk4(A) : KISSTDEVQVLFLKKTPKIISLVKEWNPTIHLIGFKLLVDVTEDHLVDIARKSLIKNQADLIIANDLTQISADQHRAIFVEKNQLQTVQTKEEIAELLLEKIQAYH*              
         :                                                                                                                          
 2gk4(B) : -----dEVQVLFLKKTP-iISLVKEWNPTIHLIGFKLLVDVTEDHLVDIARKSLIKNQADLIIANDLTQISADQHRAIFVEKNQLQTVQTKEEIAELLLEKIQAYHS              
           ____________137____________________________________________________________________________________________              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.6
Translation
(A)
0.1
Closure
(%)
97.4
Bending Residues
( green )
  9 - 10
  22 - 25
  90 - 91
  137 - 144
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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