Coproporphyrinogen III Oxidase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Coproporphyrinogen III Oxidase
  Conformer 1
(PDB)
1txn (A)
  Conformer 2
(PDB)
1tlb (Q)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 186 2.89   17 - 77   109 - 186   213 - 263
2 20 2.94   78 - 108

Sequence


           _________________________________________________________________________76_____________________________108_____________ 
 1txn(A) : PAPQDPRNLPIRQQ-eALIRRKQAEITQGLESIDTVKFHADTWTRGNDGGGGTS-vIQDGTTFEKGGVNVSVVYGQLSPAAVSA-kADHKNLRLP----------dGVKFFACGLS-vIH 
         :                                                                                                                          
 1tlb(Q) : *APQDPRNLPIRQQMEALIRRKQAEITQGLESIDTVKFHADTWTRGNDGGGGTSMVIQDGTTFEKGGVNVSVVYGQLSPAAVSAMKADHKNLRLPEDPKTGLPVTDGVKFFACGLSMVIH 
           _________________________________________________________________________76_____________________________108_____________ 

           ________________________________________________________________________________________________________________________ 
 1txn(A) : PVNPHAPTTHLNYRYFETWNQDGTPQTWWFGGGADLTPSYLYEEDGQLFHQLHKDALDKHDTALYPRFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILK-vEDCFDAFLPSYLT 
         :                                                                                                                          
 1tlb(Q) : PVNPHAPTTHLNYRYFETWNQDGTPQTWWFGGGADLTPSYLYEEDGQLFHQLHKDALDKHDTALYPRFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKMVEDCFDAFLPSYLT 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________________                                  
 1txn(A) : IVKRRKD-pYTKEEQQWQAIRRGRYVEFN**********************************************************                                  
         :                                                                                                                          
 1tlb(Q) : IVKRRKDMPYTKEEQQWQAIRRGRYVEFNLIYDRGTQFGLRTPGSRVESILMSLPEHASWLYNHHPAPGSREAKLLEVTTKPREWVK                                  
           _______________________________________________________________________________________                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
46.8
Translation
(A)
0.1
Closure
(%)
99.9
Bending Residues
( green )
  76 - 80
  108 - 110
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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