3-Dehydroquinate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Dehydroquinate Synthase
  Conformer 1
(PDB)
1xah (A)
  Conformer 2
(PDB)
1xag (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 170 0.48   3 - 165   209 - 211   222 - 231
2 149 0.49   166 - 208   212 - 221   232 - 350

Sequence


           ________________________________________________________________________________________________________________________ 
 1xah(A) : MKLQTTYPSNNYPIYVEHGAIKYIGTYLNQFDQSFLLIDEYVNQYFANKFD------nVHKVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAATLLRGVHFI 
         :                                                                                                                          
 1xag(A) : MKLQTTYPSNNYPIYVEHGAIKYIGTYLNQFDQSFLLIDEYVNQYFANKFDDILSYENVHKVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAATLLRGVHFI 
           ________________________________________________________________________________________________________________________ 

           __________________________________________165________________________________________208__________221_______231_________ 
 1xah(A) : QVPTTILAHDSSVGGKVGINSKQGKNLIGAFYRPTAVIYDLDFLKTLPFKQILSGYAEVYKHALLNGESATQDIEQHFKDREILQSLNGMDKYIAKGIETKLDIVVADEKEQGVRKFLNL 
         :                                                                                                                          
 1xag(A) : QVPTTILAHDSSVGGKVGINSKQGKNLIGAFYRPTAVIYDLDFLKTLPFKQILSGYAEVYKHALLNGESATQDIEQHFKDREILQSLNGMDKYIAKGIETKLDIVVADEKEQGVRKFLNL 
           __________________________________________165________________________________________208__________221_______231_________ 

           _________________________________________________________________________________________________________________        
 1xah(A) : GHTFGHAVEYYHKIPHGHAVMVGIIYQFIVANALFDSKHDISHYIQYLIQLGYPLD-----------------------gVQMVLMRQFGDIVVQHVDQLTLQHACEQLKTY*        
         :                                                                                                                          
 1xag(A) : GHTFGHAVEYYHKIPHGHAVMVGIIYQFIVANALFDSKHDISHYIQYLIQLGYPLDMITDLDFETLYQYMLSDKKNDKQGVQMVLMRQFGDIVVQHVDQLTLQHACEQLKTYF        
           _________________________________________________________________________________________________________________        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.0
Translation
(A)
-0.1
Closure
(%)
99.9
Bending Residues
( green )
  165 - 166
  208 - 209
  211 - 212
  221 - 222
  231 - 232
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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