2-Dehydropantoate 2-Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 2-Dehydropantoate 2-Reductase
  Conformer 1
(PDB)
1ks9 (A)
  Conformer 2
(PDB)
1yjq (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 184 0.67   3 - 176   249 - 249   252 - 260
2 103 0.51   177 - 248   250 - 251   261 - 289

Sequence


           ________________________________________________________________________________________________________________________ 
 1ks9(A) : MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQQPLLMGTTTH 
         :                                                                                                                          
 1yjq(A) : MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQQPLLMGTTTH 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________176________________________________________________________________ 
 1ks9(A) : AARRDGNVIIHVANGITHIGPARQQDGDYSYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATAE 
         :                                                                                                                          
 1yjq(A) : AARRDGNVIIHVANGITHIGPARQQDGDYSYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATAE 
           _____________________________________________________176________________________________________________________________ 

           _____248_________260_________________________________                                                                    
 1ks9(A) : NISSMLQDIRALRHTEIDYINGFLLRRARAHGIAVPENTRLFEMVKRKESE**                                                                    
         :                                                                                                                          
 1yjq(A) : NISSMLQDIRALRHTEIDYINGFLLRRARAHGIAVPENTRLFEMVKRKESEYE                                                                    
           _____248_________260_________________________________                                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.2
Translation
(A)
0.1
Closure
(%)
72.1
Bending Residues
( green )
  176 - 180
  248 - 252
  260 - 261
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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