3-Deoxy-Manno-Octulosonate Cytidylyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Deoxy-Manno-Octulosonate Cytidylyltransferase
  Conformer 1
(PDB)
1gqc (A)
  Conformer 2
(PDB)
1h7h (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 160 0.68   3 - 109   114 - 121   175 - 192   213 - 239
2 77 0.4   110 - 113   122 - 174   193 - 212

Sequence


           __________________________________________________________________________________________________________109_113_____12 
 1gqc(A) : SKAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRLVEVMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPAL 
         :                                                                                                                          
 1h7h(B) : SKAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRLVEVMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPAL 
           __________________________________________________________________________________________________________109_113_____12 

           1__________________________________________________174________185________________________212____________________________ 
 1gqc(A) : PVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQE 
         :                                                                                                                          
 1h7h(B) : PVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQE 
           1__________________________________________________174________185________________________212____________________________ 

           __                                                                                                                       
 1gqc(A) : LA                                                                                                                       
         :                                                                                                                          
 1h7h(B) : L*                                                                                                                       
           __                                                                                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.1
Translation
(A)
-0.2
Closure
(%)
99.2
Bending Residues
( green )
  109 - 110
  113 - 114
  121 - 122
  174 - 175
  185 - 194
  212 - 213
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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