3-Deoxy-Manno-Octulosonate Cytidylyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Deoxy-Manno-Octulosonate Cytidylyltransferase
  Conformer 1
(PDB)
1vh1 (B)
  Conformer 2
(PDB)
1vh1 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 128 1.29   4 - 4   66 - 77   86 - 91   109 - 225
2 86 1.28   5 - 65   78 - 85   92 - 108   226 - 244

Sequence


           __4__________________________________________________________65____________85____91_____________108_____________________ 
 1vh1(B) : SFVVIIPARY------gKPLVDINGKPiVHVLERARESGAERIIVATDHEDVARAVEAAGGEVCtRAtERLAEVVEKCAFSDDTVIVNVQGDEPiPATIIRQVADNLAQRQVGaTLAVPI 
         :                                                                                                                          
 1vh1(D) : SFVVIIPARYASTRLPGKPLVDINGKPiVHVLERARESGAERIIVATDHEDVARAVEAAGGEVCtsGTERLAEVVEKCAFSDDTVIVNVQGDEPiPATIIRQVADNLAQRQVGaTLAVPI 
           __4__________________________________________________________65____________85____91_____________108_____________________ 

           ___________________________________________________________________________________________225_____________________      
 1vh1(B) : HNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIElEQLRVLWYGEKIHVAVA-----------eDLERVRAE      
         :                                                                                                                          
 1vh1(D) : HNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIElEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAE      
           ___________________________________________________________________________________________225_____________________      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.1
Translation
(A)
0.0
Closure
(%)
100.0
Bending Residues
( green )
  4 - 5
  65 - 78
  85 - 86
  91 - 92
  108 - 109
  225 - 241
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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