Dephospho-Coa Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dephospho-Coa Kinase
  Conformer 1
(PDB)
1vhl (A)
  Conformer 2
(PDB)
1n3b (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 156 1.08   4 - 43   88 - 204
2 43 0.85   44 - 87

Sequence


           __________________________________________43__________________________________________87________________________________ 
 1vhl(A) : SLRYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENS 
         :                                                                                                                          
 1n3b(B) : **RYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGAN-iAADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENS 
           __________________________________________43__________________________________________87________________________________ 

           ________________________________________________________________________________________                                 
 1vhl(A) : LYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPDAIASDVARLHAHYLQLASQFVSQEKPE                                 
         :                                                                                                                          
 1n3b(B) : LYKKANRVLVVDVSPETQLKRT-qRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPDAIASDVARLHAHYLQLASQFVSQEKP*                                 
           ________________________________________________________________________________________                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.2
Translation
(A)
0.9
Closure
(%)
72.8
Bending Residues
( green )
  43 - 46
  87 - 88
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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