D-Glyceraldehyde-3-Phosphate Dehydrogenase 4 (E.C.1.2.1.12)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-Glyceraldehyde-3-Phosphate Dehydrogenase 4 (E.C.1.2.1.12)
  Conformer 1
(PDB)
2gd1 (R)
  Conformer 2
(PDB)
1nq5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 186 0.49   38 - 55   59 - 59   151 - 316   319 - 320
2 144 0.56   2 - 37   56 - 58   60 - 150   317 - 318   321 - 331

Sequence


           ______________________________31____________________54__________________________________________________________________ 
 2gd1(R) : AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISA 
         :                                                                                                                          
 1nq5(A) : AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISA 
           ______________________________31____________________54__________________________________________________________________ 

           _____________________________150________________________________________________________________________________________ 
 2gd1(R) : PAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSV 
         :                                                                                                                          
 1nq5(A) : PAKNEDITIVMGVNQDKYDPKAHHVISNASSTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSV 
           _____________________________150________________________________________________________________________________________ 

           __________________________________________________________________________316_________________                           
 2gd1(R) : VDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL                           
         :                                                                                                                          
 1nq5(A) : VDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL                           
           __________________________________________________________________________316_________________                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.3
Translation
(A)
0.0
Closure
(%)
59.2
Bending Residues
( green )
  31 - 38
  54 - 63
  150 - 151
  316 - 321
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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