D-Glyceraldehyde-3-Phosphate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-Glyceraldehyde-3-Phosphate Dehydrogenase
  Conformer 1
(PDB) 		1gae (O)
  Conformer 2
(PDB) 		1dc6 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 167 0.37   47 - 51   130 - 131   147 - 153   157 - 215   218 - 237   239 - 312
2 159 0.43   2 - 46   52 - 129   132 - 146   154 - 156   216 - 217   238 - 238   313 - 328

Sequence


           ____________________________________________46___51_____________________________________________________________________ 
 1gae(O) : TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTG 
         :                                                                                                                          
 1dc6(B) : TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTG 
           ____________________________________________46___51_____________________________________________________________________ 

           _______129_____________146____153________________________________________________________212______________________237___ 
 1gae(O) : PSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVV 
         :                                                                                                                          
 1dc6(B) : PSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVV 
           _______129_____________146____153________________________________________________________212______________________237___ 

           _____________________________________________________________________312__________________                               
 1gae(O) : DLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDTETGYSNKVLDLIAHISK                               
         :                                                                                                                          
 1dc6(B) : DLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK                               
           _____________________________________________________________________312__________________                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.8
Translation
(A) 		0.1
Closure
(%) 		56.9
Bending Residues
( green ) 		  46 - 47
  51 - 52
  129 - 132
  146 - 147
  153 - 154
  156 - 157
  212 - 219
  237 - 239
  312 - 313
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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