Dihydrodipicolinate Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dihydrodipicolinate Reductase
  Conformer 1
(PDB)
1yl7 (C)
  Conformer 2
(PDB)
1yl5 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 129 0.77   3 - 51   53 - 104   215 - 218   220 - 243
2 112 0.52   52 - 52   105 - 214   219 - 219

Sequence


           ___________________________________________________51__________________________________________________104______________ 
 1yl7(C) : **ARVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQ 
         :                                                                                                                          
 1yl5(B) : AMARVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQ 
           ___________________________________________________51__________________________________________________104______________ 

           ___________________________________________________________________________________________212__________________________ 
 1yl7(C) : AARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRIAERPGLTVGL 
         :                                                                                                                          
 1yl5(B) : AARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRIAERPGLTVGL 
           ___________________________________________________________________________________________212__________________________ 

           _______                                                                                                                  
 1yl7(C) : EPLLDLH                                                                                                                  
         :                                                                                                                          
 1yl5(B) : EPLLDLH                                                                                                                  
           _______                                                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.5
Translation
(A)
1.6
Closure
(%)
90.6
Bending Residues
( green )
  51 - 53
  104 - 105
  212 - 220
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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