4-Diphosphocytidyl-2-C-Methylerythritol Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 4-Diphosphocytidyl-2-C-Methylerythritol Synthetase
  Conformer 1
(PDB)
1ini (A)
  Conformer 2
(PDB)
1vgt (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 121 0.82   15 - 47   49 - 49   66 - 69   104 - 121   125 - 166   191 - 225
2 82 0.71   8 - 14   48 - 48   50 - 65   70 - 103   122 - 124   167 - 190

Sequence


           _________14_______________________________47________________65__69_______________________________103_______________121__ 
 1ini(A) : THLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLAL 
         :                                                                                                                          
 1vgt(A) : **LDVCAVVPAA----------pKQYLSIGNQTILEHSVHALLAHPRVKRVVIAIS---sRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLAL 
           _________14_______________________________47________________65__69_______________________________103_______________121__ 

           ________________________________________166_____________________190______________________________________                
 1ini(A) : SETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLT                
         :                                                                                                                          
 1vgt(A) : SETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVT--eDLALAEFYL*                
           ________________________________________166_____________________190______________________________________                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.7
Translation
(A)
-0.1
Closure
(%)
95.6
Bending Residues
( green )
  14 - 28
  47 - 50
  65 - 66
  69 - 70
  103 - 104
  121 - 122
  124 - 125
  166 - 167
  190 - 191
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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