Divalent Cation Transport-Related Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Divalent Cation Transport-Related Protein
  Conformer 1
(PDB)
2iub (H)
  Conformer 2
(PDB)
2iub (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 25 0.39   285 - 309
2 277 0.09   8 - 284
3 24 0.27   310 - 347

Sequence


           ________________________________________________________________________________________________________________________ 
 2iub(H) : *LSAKKGLPPGTLVYTGKYREDFEIEVMNYSIEEFREFKTTDVESVLPFRDSSTPTWINITGIHRTDVVQRVGEFFGIHPLVLEDILNVHQRPKVEFFENYVFIVLKMFTYDKNLHELES 
         :                                                                                                                          
 2iub(E) : RLSAKKGLPPGTLVYTGKYREDFEIEVMNYSIEEFREFKTTDVESVLPFRDSSTPTWINITGIHRTDVVQRVGEFFGIHPLVLEDILNVHQRPKVEFFENYVFIVLKMFTYDKNLHELES 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2iub(H) : EQVSLILTKNCVLMFQEKIGDVFDPVRERIRYNRGIIRKKRADYLLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLIE 
         :                                                                                                                          
 2iub(E) : EQVSLILTKNCVLMFQEKIGDVFDPVRERIRYNRGIIRKKRADYLLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLIE 
           ________________________________________________________________________________________________________________________ 

           _____________________________________284______________________309__________________________________                      
 2iub(H) : KETVPYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAGIYGMeLRWKWGYPVVLAVMGVIAVIMVVYFKKKK                      
         :                                                                                                                          
 2iub(E) : KETVPYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAGIYG--------yPVVLAVMGVIAVIMVVYFKKKK                      
           _____________________________________284______________________309__________________________________                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.4
Translation
(A)
-1.1
Closure
(%)
91.2
Bending Residues
( green )
  284 - 289
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
6.1
Translation
(A)
0.3
Closure
(%)
81.7
Bending Residues
( green )
  309 - 328
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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