DNA Alpha-Glucosyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Alpha-Glucosyltransferase
  Conformer 1
(PDB)
1ya6 (B)
  Conformer 2
(PDB)
1y8z (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 341 0.48   1005 - 1230   1252 - 1394
2 21 1.05   1231 - 1251

Sequence


           ________________________________________________________________________________________________________________________ 
 1ya6(B) : MGSMRICIFMARGLEGCGVTKFSLEQRDWFIKNGHEVTLVYAKDKSFTRTSSHDHKSFSIPVILAKEYDKALKLVNDCDILIINSVPATSVQEATINNYKKLLDNIKPSIRVVVYQHDHS 
         :                                                                                                                          
 1y8z(A) : *GSMRICIFMARGLEG-gVTKFSLEQRDWFIKNGHEVTLVYAKDKSFTRTSSHDHKSFSIPVILAKEYDKALKLVNDCDILIINSVPATSVQEATINNYKKLLDNIKPSIRVVVYQHDHS 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________________________________1230_________________1 
 1ya6(B) : VLSLRRNLGLEETVRRADVIFSHSD---------------pTVYNFQPPMDIVKVRSTYWKDVSEINMNINRWIGRTTTWKGFYQMFDFHEKFLKPAGKSTVMEGLERSPAFIAIKEKGI 
         :                                                                                                                          
 1y8z(A) : VLSLRRNLGLEETVRRADVIFSHSDNGDFNKVLMKEWYPaPTVYNFQPPMDIVKVRSTYWKDVSEINMNINRWIGRTTTWKGFYQMFDFHEKFLKPAGKSTVMEGLERSPAFIAIKEKGI 
           __________________________________________________________________________________________________1230_________________1 

           251_____________________________________________________________________________________________________________________ 
 1ya6(B) : PYEYYGNREIDKMNLAPNQPAQILDCYINSEMLERMSKSGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTPLTSHDSGIIWFDENDMESTFERIKELSSDRA 
         :                                                                                                                          
 1y8z(A) : PYEYYGNREIDKMNLAPNQPAQILD-yINSEMLERMSKSGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTPLTSHDSGIIWFDENDMESTFERIKELSSDRA 
           251_____________________________________________________________________________________________________________________ 

           ________________________________                                                                                         
 1ya6(B) : LYDREREKAYEFLYQHQDSSFCFKEQFDIITK                                                                                         
         :                                                                                                                          
 1y8z(A) : LYDREREKAYEFLYQHQDSSFCFKEQFDIITK                                                                                         
           ________________________________                                                                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.7
Translation
(A)
-0.1
Closure
(%)
99.9
Bending Residues
( green )
  1230 - 1231
  1251 - 1253
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download