DNA Helicase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Helicase
  Conformer 1
(PDB) 		1e0j (A)
  Conformer 2
(PDB) 		1e0j (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 262 0.25   286 - 547
2 20 1.63   264 - 285

Sequence


           ___________________284__________________________________________________________________________________________________ 
 1e0j(A) : IPDGVVSALSLRERIREHLSS--sVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQ 
         :                                                                                                                          
 1e0j(E) : *PDGVVSALSLRERIREHLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQ 
           ___________________284__________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1e0j(A) : WFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTII 
         :                                                                                                                          
 1e0j(E) : WFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTII 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________                                                                        
 1e0j(A) : ALERNQQGDMPNLVLVRILKCRFTGDTGIAGYMEYNKETGWLEPSSYSG                                                                        
         :                                                                                                                          
 1e0j(E) : ALERNQQGDMPNLVLVRILKCRFTGDTGIAGYMEYNKETGWLEPSSYSG                                                                        
           _________________________________________________                                                                        

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		41.7
Translation
(A) 		-1.7
Closure
(%) 		67.3
Bending Residues
( green ) 		  284 - 286
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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