DNA Mismatch Repair Protein Mutl

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Mismatch Repair Protein Mutl
  Conformer 1
(PDB)
1x9z (B)
  Conformer 2
(PDB)
1x9z (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 93 0.32   469 - 561
2 82 0.88   435 - 468   562 - 611

Sequence


           __________________________________468___________________________________________________________________________________ 
 1x9z(B) : SQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQLTPGEAPVCAQPLLIPLRLKVSAEEKSALEKAQSALAELGIDFQSDAQHVTIRAVPLPLRQQNLQILIPELIGYLAKQSV 
         :                                                                                                                          
 1x9z(A) : *QSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQLTPGEAPVCAQPLLIPLRLKVSAEEKSALEKAQSALAELGIDFQSDAQHVTIRAVPLPLRQQNLQILIPELIGYLAKQSV 
           __________________________________468___________________________________________________________________________________ 

           _____559_____________________________________________________                                                            
 1x9z(B) : FEPGNIAQWIARNLsEHAQWSaQAITLLADVERLCPQLVKTPPGGLLQSVDLHPAIKALK*                                                            
         :                                                                                                                          
 1x9z(A) : FEPGNIAQWIARNLsEHAQWSaQAITLLADVERLCPQLVKTPPGGLLQSVDLHPAIKALKD                                                            
           _____559_____________________________________________________                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.3
Translation
(A)
-0.2
Closure
(%)
96.1
Bending Residues
( green )
  468 - 470
  559 - 571
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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